Welcome to the data repository from the Silveyra Lab

PRINCIPAL INVESTIGATOR: Dr. Patricia Silveyra

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Here you will find information about our projects, protocols, and data analysis from our publications

Data repository

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Dustin Rousselle’s thesis data R code and analysis files

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Siddaiah R, Oji-Mmuo C, Aluquin VPR, Kawasawa YI, Donnelly A, Rousselle D, Fuentes N, Austin ED, Silveyra P. Multiomics endotyping of preterm infants with bronchopulmonary dysplasia and pulmonary hypertension-A pilot study. Pulm Circ. 2023 Apr 1;13(2):e12232

Access GEO miRNA - Access GEO mRNA

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Siddaiah R, Oji-Mmuo CN, Montes DT, Fuentes N, Donnelly A, Spear D, Silveyra P “MicroRNA Signatures Associated with Bronchopulmonary Dysplasia Severity in Tracheal Aspirates of Preterm Infants”. Biomedicines. 2021 Mar 5;9(3):257

Access GEO miRNA - R code - miRNA raw data -

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Oji-Mmuo CN, Siddaiah R, Montes DT, Pham M, Spear D, Donnelly A, Fuentes N, Imamura-Kawasawa Y, Howrylak JA, Thomas N, Silveyra P “Tracheal aspirate transcriptomic and miRNA signatures of extreme premature birth with bronchopulmonary dysplasia”. J Perinatol 2020 Nov 11

Access GEO miRNA - Access GEO mRNA - R code -

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Fesen K, Silveyra P, Fuentes N, Nicoleau M, Rivera L, Kitch D, Graff G, Siddaiah R. “The Role of microRNAs in Chronic Pseudomonas Lung Infection in Cystic Fibrosis”. Respiratory Medicine 151 (2019) 133-138

Access GEO - miRNA expression in EBC (raw data) - R code

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Fuentes N, Cabello N, Nicoleau M, Chroneos Z, Silveyra P. “Modulation of the lung inflammatory response to ozone by the estrous cycle”. Physiol Rep. 2019 Mar;7(5):e14026

Access GEO - mRNA expression in lung tissue (raw data) - R code

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Fuentes N, Roy A, Mishra V, Cabello N, Silveyra P. “Sex-specific microRNA expression networks in an acute model of ozone-induced lung inflammation”. Biol Sex Differ. 2018 May 8;9(1):18

Access GEO - miRNA expression in lung tissue (raw data) - R code